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【结 构 式】

【药物名称】Emtricitabine, BW-524W91, 524W91, (-)-FTC, Emtriva, Coviracil

【化学名称】(-)-2',3'-Dideoxy-5-fluoro-3'-thiacytidine
      (-)-(2R,5S)-5-Fluoro-1-[2-(hydroxymethyl)-1,3-oxathiolan-5-yl]cytosine
      (-)-(2R-cis)-4-Amino-5-fluoro-1-[2-(hydroxymethyl)-1,3-oxathiolan-5-yl]-2(1H)-pyrimidinone

【CA登记号】143491-57-0

【 分 子 式 】C8H10FN3O3S

【 分 子 量 】247.2496

【开发单位】Emory University (Originator), Gilead (Licensee), Japan Tobacco (Licensee)

【药理作用】AIDS Medicines, Anti-Hepatitis B Virus Drugs, Anti-Hepatitis Virus Drugs, Anti-HIV Agents, ANTIINFECTIVE THERAPY, Antiviral Drugs, Reverse Transcriptase Inhibitors

合成路线1

 

1 Mansour T,Jin H.et al.1997.Processes for the diastereoselective synthesisof nucleoside analogues. US 5696254
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(I) 36958 1,4-dithiane-2,5-diol 40018-26-6 C4H8O2S2 详情 详情
(II) 15618 2-Oxoacetic acid; Glyoxylic Acid 298-12-4 C2H2O3 详情 详情
(III) 66301 (2S,5R)-5-hydroxy-1,3-oxathiolane-2-carboxylic acid   C4H6O4S 详情 详情
(IV) 66302 (2R,5R)-5-hydroxy-1,3-oxathiolane-2-carboxylic acid 147027-04-1 C4H6O4S 详情 详情
(V) 15620 (2R,5R)-5-(acetoxy)-1,3-oxathiolane-2-carboxylic acid 147027-05-2 C6H8O5S 详情 详情
(VI) 66303 (2R,5S)-2-isopropyl-5-methylcyclohexanol   C10H20O 详情 详情
(VII) 55067 (1R,2S,5R)-2-isopropyl-5-methylcyclohexyl (2R,5R)-5-(acetyloxy)-1,3-oxathiolane-2-carboxylate C16H26O5S 详情 详情
(VIII) 66304     C16H26O5S 详情 详情
(IX) 36959 5-fluoro-N-(trimethylsilyl)-2-[(trimethylsilyl)oxy]-4-pyrimidinamine; N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]-N-(trimethylsilyl)amine C10H20FN3OSi2 详情 详情
(X) 66305 (2S,5R)-(1S,2R,5S)-2-isopropyl-5-methylcyclohexyl 5-(4-amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolane-2-carboxylate   C18H26FN3O4S 详情 详情

合成路线2

 

1 Ren D.2005.Inclustrial scale preparation of emtricitabine.发明专利申请公开说明书,CN 1563002
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(VIII) 36959 5-fluoro-N-(trimethylsilyl)-2-[(trimethylsilyl)oxy]-4-pyrimidinamine; N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]-N-(trimethylsilyl)amine C10H20FN3OSi2 详情 详情
(I) 36958 1,4-dithiane-2,5-diol 40018-26-6 C4H8O2S2 详情 详情
(II) 15618 2-Oxoacetic acid; Glyoxylic Acid 298-12-4 C2H2O3 详情 详情
(VI) 66303 (2R,5S)-2-isopropyl-5-methylcyclohexanol   C10H20O 详情 详情
(X) 66305 (2S,5R)-(1S,2R,5S)-2-isopropyl-5-methylcyclohexyl 5-(4-amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolane-2-carboxylate   C18H26FN3O4S 详情 详情
(XI) 66306 (2R,5S)-2-isopropyl-5-methylcyclohexyl 2-oxoacetate   C12H20O3 详情 详情
(XII) 66308 (5R)-(1S,2R,5S)-2-isopropyl-5-methylcyclohexyl 5-hydroxy-1,3-oxathiolane-2-carboxylate   C14H24O4S 详情 详情
(XIII) 66307 (5R)-(1S,2R,5S)-2-isopropyl-5-methylcyclohexyl 5-hydroxy-1,3-oxathiolane-2-carboxylate   C16H26O5S 详情 详情

合成路线3

 

1 Richhariya S.Singh K, et aL 2007.Process for the preparation of crystalline l-menthyl (ZR.5S)-5-( 4-amino-5-fluoro-2-oxo-2H-pyrimidin-1-yl)[1,3]oxathiolanr2-carboxylate. W0 2007077505
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(VIII) 36959 5-fluoro-N-(trimethylsilyl)-2-[(trimethylsilyl)oxy]-4-pyrimidinamine; N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]-N-(trimethylsilyl)amine C10H20FN3OSi2 详情 详情
(X) 66305 (2S,5R)-(1S,2R,5S)-2-isopropyl-5-methylcyclohexyl 5-(4-amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolane-2-carboxylate   C18H26FN3O4S 详情 详情
(XII) 66308 (5R)-(1S,2R,5S)-2-isopropyl-5-methylcyclohexyl 5-hydroxy-1,3-oxathiolane-2-carboxylate   C14H24O4S 详情 详情
(XIV) 66309 (5R)-(1S,2R,5S)-2-isopropyl-5-methylcyclohexyl 5-chloro-1,3-oxathiolane-2-carboxylate   C14H23ClO3S 详情 详情

合成路线4

 

1 Painter GR,Lrotta DC,et且1. 2000.Method ofmanufacture of l,3-oxathiolane nucleosides. wo 2000009494
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(I) 36968 (5-oxo-1,3-oxathiolan-2-yl)methyl butyrate C8H12O4S 详情 详情
(II) 66310 (5-acetoxy-1,3-oxathiolan-2-yl)methyl butyrate   C10H16O5S 详情 详情
(III) 66311 (5-chloro-1,3-oxathiolan-2-yl)methyl butyrate   C8H13ClO3S 详情 详情
(IV) 66312 (5-(4-amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl)methyl butyrate   C12H16FN3O4S 详情 详情
(V) 36970 (rac)-[(2R,5S)-5-[4-amino-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl butyrate C12H16FN3O4S 详情 详情

合成路线5

 

1 Liotta DC, Schinazi RF, et al.1993. The preparation of 2'-deoxy-5-fluoro-3'-thiacytidine and related compounds as anti-HIV nucleosides. US 5210085
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(I) 12234 2-Propen-1-ol; Allyl alcohol 107-18-6 C3H6O 详情 详情
(II) 66313 tert-Butylchlorodiphenylsilane;tert-Butyldiphenylchlorosilane;tert-Butyldiphenylsilyl chloride 58479-61-1 C16H19ClSi 详情 详情
(III) 66314 (allyloxy)(tert-butyl)diphenylsilane   C19H24OSi 详情 详情
(IV) 44475 2-[[tert-butyl(diphenyl)silyl]oxy]acetaldehyde C18H22O2Si 详情 详情
(V) 18524 2-sulfanylacetic acid 68-11-1 C2H4O2S 详情 详情
(VI) 66315 2-(((tert-butyldiphenylsilyl)oxy)methyl)-1,3-oxathiolan-5-one   C20H24O3SSi 详情 详情
(VII) 55072 (2R)-2-({[tert-butyl(diphenyl)silyl]oxy}methyl)-1,3-oxathiolan-4-yl acetate C22H28O4SSi 详情 详情
(VIII) 36959 5-fluoro-N-(trimethylsilyl)-2-[(trimethylsilyl)oxy]-4-pyrimidinamine; N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]-N-(trimethylsilyl)amine C10H20FN3OSi2 详情 详情
(IX) 66316 4-amino-1-((2S,5R)-2-(((tert-butyldiphenylsilyl)oxy)methyl)-1,3-oxathiolan-5-yl)-5-fluoropyrimidin-2(1H)-one   C24H28FN3O3SSi 详情 详情

合成路线6

The selective tosylation of L-gulose with tosyl chloride in pyridine, followed by complete acetylation with acetic anhydride gives tetraacetyl-6-O-tosyl-L-gulose (II), which is treated with HBr in AcOH to yield the bromo derivative (III). The reaction of (III) with potassium O-ethylxanthate in refluxing acetone, followed by deacetylation with NH4OH in methanol affords 1,6-thioanhydro-L-gulopyranose (IV). The selective oxidative cleavage of (IV) by means of NaIO4, followed by reduction with NaBH4 and protection of the resulting diol with acetone and TsOH provides the acetonide (V), which is silylated at the primary OH group with TBDMS-Cl giving the silyl ether (VI). Elimination of the acetonide group with TsOH in methanol yields the diol (VII), which is cleaved with Pb(OAc)4 and oxidized with PDC in DMF to afford the carboxylic acid (VIII). The treatment of (VII) with Pb(OAc)4/pyridine in THF furnishes the diacetate (IX), which is condensed with N4-acetyl-5-fluoro-O-(trimethylsilyl)cytosine (X) by means of TBDMS-OTf in dichloromethane yielding a mixture of the desired (-)(2R,5S)-isomer (XI) along with its (+)-(2R,5R)-isomer that is separated by column chromatography. Finally, deacetylation of (XI) with ammonia in methanol, followed by desilylation with TBAF in THF afforded the target compound.

1 Jeong, L.S.; et al.; Asymmetric synthesis and biological evaluation of beta-L-(2R,5S)- and alpha-L-(2R,5R)-1, 3-oxathiolane-pyrimidine and -purine nucleosides as potential anti-HIV agents. J Med Chem 1993, 36, 2, 181.
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(I) 36947 (3S,4S,5S,6S)-6-(hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetrol C6H12O6 详情 详情
(II) 36948 (2S,3R,4S,5S)-4,5,6-tris(acetoxy)-2-([[(4-methylphenyl)sulfonyl]oxy]methyl)tetrahydro-2H-pyran-3-yl acetate C21H26O12S 详情 详情
(III) 36949 (2R,3S,4S,5S,6S)-3,5-bis(acetoxy)-2-bromo-6-([[(4-methylphenyl)sulfonyl]oxy]methyl)tetrahydro-2H-pyran-4-yl acetate C19H23BrO10S 详情 详情
(IV) 36950 (2S,3S,4S)-8-oxa-6-thiabicyclo[3.2.1]octane-2,3,4-triol C6H10O4S 详情 详情
(V) 36951 [(2R,5R)-5-[(4R)-2,2-dimethyl-1,3-dioxolan-4-yl]-1,3-oxathiolan-2-yl]methanol C9H16O4S 详情 详情
(VI) 36952 tert-butyl([(2R,5R)-5-[(4R)-2,2-dimethyl-1,3-dioxolan-4-yl]-1,3-oxathiolan-2-yl]methoxy)dimethylsilane; tert-butyl(dimethyl)silyl [(2R,5R)-5-[(4R)-2,2-dimethyl-1,3-dioxolan-4-yl]-1,3-oxathiolan-2-yl]methyl ether C15H30O4SSi 详情 详情
(VII) 36953 (1R)-1-[(2R,5R)-2-([[tert-butyl(dimethyl)silyl]oxy]methyl)-1,3-oxathiolan-5-yl]-1,2-ethanediol C12H26O4SSi 详情 详情
(VIII) 36954 (2R)-2-[(acetoxy)methyl]-1,3-oxathiolane-5-carboxylic acid C7H10O5S 详情 详情
(IX) 36955 (2R)-2-[(acetoxy)methyl]-1,3-oxathiolan-5-yl acetate C8H12O5S 详情 详情
(X) 36956 N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]acetamide C9H14FN3O2Si 详情 详情
(XI) 36957 [(2R,5S)-5-[4-(acetamido)-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl acetate C12H14FN3O5S 详情 详情

合成路线7

The reaction of 1,4-dithiane-2,5-diol (XII) with 2-(benzoyloxy)acetaldehyde (XIII) in hot pyridine gives 5-acetoxy-2-(benzoyloxymethyl)-1,3-oxathiolane (XIV), which is condensed with fully silylated cytosine (XV) (obtained by silylation of cytosine (XVI) with HMDS) by means of TBDMS-OTf, yielding, after acetylation with Ac2O, a mixture of the desired racemic-cis substituted fluorocytosine (XVII) along with its racemic trans isomer, which are separated by flash chromatography. The deacylation of (XVII) with ammonia in methanol gives the racemic cis-2-(hydroxymethyl)-5-(5-fluorocytosin-1-yl)-1,3-oxathiolane (XVIII), which is phosphorylated with POCl3 and water in trimethyl phosphate yielding the racemic phosphate (XIX). The enantioselective dephosphorylation of (XIX) with 5'-nucleotidase (Sigma), affords a mixture of the (+)-(cis)-dephosphorylated compound (XXI) and unreacted (-)-(cis)-compound (XX) that are separated by column chromatography. Finally, (XX) is dephosphorylated by means of alkaline phosphatase (Sigma) to afford the target compound.

1 Dionne, G. (BioChem Pharma Inc.); 1,3-Oxathiolane nucleoside analogues. EP 0526253; JP 1995500317; US 5538975; WO 9303027 .
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(XII) 36958 1,4-dithiane-2,5-diol 40018-26-6 C4H8O2S2 详情 详情
(XIII) 15605 2-oxoethyl benzoate C9H8O3 详情 详情
(XIV) 36964 [5-(acetoxy)-1,3-oxathiolan-2-yl]methyl benzoate C13H14O5S 详情 详情
(XV) 36959 5-fluoro-N-(trimethylsilyl)-2-[(trimethylsilyl)oxy]-4-pyrimidinamine; N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]-N-(trimethylsilyl)amine C10H20FN3OSi2 详情 详情
(XVI) 16747 4-amino-5-fluoro-2(1H)-pyrimidinone; 5-fluorocytosine 2022-85-7 C4H4FN3O 详情 详情
(XVII) 36960 [(2R,5S)-5-[4-(acetamido)-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl benzoate C17H16FN3O5S 详情 详情
(XVIII) 36961 4-amino-5-fluoro-1-[(2R,5S)-2-(hydroxymethyl)-1,3-oxathiolan-5-yl]-2(1H)-pyrimidinone C8H10FN3O3S 详情 详情
(XIX) 64685 (rac)-({(2R*,5S*)-5-[4-amino-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl}methyl dihydrogen phosphate) C8H11FN3O6PS 详情 详情
(XX) 36962 [(2R,5S)-5-[4-amino-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate C8H11FN3O6PS 详情 详情
(XXI) 36963 4-amino-5-fluoro-1-[(2S,5R)-2-(hydroxymethyl)-1,3-oxathiolan-5-yl]-2(1H)-pyrimidinone C8H10FN3O3S 详情 详情

合成路线8

The acylation of 2-butene-1,4-diol (XXII) with butyryl chloride and DMAP in pyridine gives the dibutyrate (XXIII), which is ozonolyzed with O3 in dichloromethane yielding the aldehyde (XXIV). The cyclization of (XXIV) with mercaptoacetic acid (XXV) in refluxing toluene affords 2-(butyryloxymethyl)-1,3-oxathiolane-5-one (XXVI), which is reduced with lithium tri-tert-butoxyaluminum hydride and acetylated with acetic anhydride in THF to give 5-acetoxy-2-(butyryloxymethyl)-1,3-oxathiolane (XXVII). The condensation of (XXVII) with disilylated 5-fluorocytosine (XV) (obtained from cytosine (XVI) as described) by means of SnCl4 in dichloromethane yields the racemic butyryl nucleoside rac-(cis)-(XXVIII). The biological resolution of this racemic mixture has been performed by digestion with the enzyme pig liver esterase (PLE-A) providing a mixture of unreacted (-)-(cis)-(2R,5S)-(XXVIII) butyrate and hydrolyzed (+)-(cis)-(2S,5R)-(XXIX) that are separated by fractional extraction. The desired (-)-(cis)-(2R,5S)-enantiomer is finally hydrolyzed to the target compound with NaOMe in methanol. The biological resolution of rac-(cis)-(XXVIII) can also be performed with the enzyme Amano PS-800 yielding a mixture of unreacted (+)-(cis)-(2S,5R)-(XXVIII) butyrate and the desired (-)-(cis)-(2R,5S) target nuceloside that are separated by fractional extraction.

1 Liotta, D.C.; Schinazi, R.F.; Choi, W.-B. (Emory University); Antiviral activity and resolution of 2-hydroxymethyl-5-(5-fluorocytosin-1-yl)-1, 3-oxathiolane. EP 0984013; JP 1994508605; JP 1998147586; WO 9214743 .
2 Hoong, L.K.; et al.; Enzyme-mediated enantioselective preparation of pure enantiomers of the antiviral agent 2', 3'-dideoxy-5-fluoro-3'-thiacytidine (FTC) and related compounds. J Org Chem 1992, 57, 21, 5563.
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(rac)-(XXVIII) 36970 (rac)-[(2R,5S)-5-[4-amino-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl butyrate C12H16FN3O4S 详情 详情
(+)-(XXVIII) 36971 [(2S,5R)-5-[4-amino-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl butyrate C12H16FN3O4S 详情 详情
(-)-cis-(XXVIII) 36972 (-)-cis-[(2R,5S)-5-[4-amino-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl butyrate C12H16FN3O4S 详情 详情
(XV) 36959 5-fluoro-N-(trimethylsilyl)-2-[(trimethylsilyl)oxy]-4-pyrimidinamine; N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]-N-(trimethylsilyl)amine C10H20FN3OSi2 详情 详情
(XVI) 16747 4-amino-5-fluoro-2(1H)-pyrimidinone; 5-fluorocytosine 2022-85-7 C4H4FN3O 详情 详情
(XXII) 36965 (Z)-2-butene-1,4-diol 6117-80-2 C4H8O2 详情 详情
(XXIII) 36966 (Z)-4-(butyryloxy)-2-butenyl butyrate C12H20O4 详情 详情
(XXIV) 36967 2-oxoethyl butyrate C6H10O3 详情 详情
(XXV) 18524 2-sulfanylacetic acid 68-11-1 C2H4O2S 详情 详情
(XXVI) 36968 (5-oxo-1,3-oxathiolan-2-yl)methyl butyrate C8H12O4S 详情 详情
(XXVII) 36969 [5-(acetoxy)-1,3-oxathiolan-2-yl]methyl butyrate C10H16O5S 详情 详情
(XXIX) 36963 4-amino-5-fluoro-1-[(2S,5R)-2-(hydroxymethyl)-1,3-oxathiolan-5-yl]-2(1H)-pyrimidinone C8H10FN3O3S 详情 详情

合成路线9

A new process for the preparation of emtricitabine has been described: The esterification of 2-butene-1,4-diol (I) with butyryl chloride and DMAP in pyridine gives the diester (II), which by ozonolysis with O3 in methanol provides the hemiacetal (III). Cyclization of (III) with 2-mercaptoacetic acid in refluxing toluene affords racemic 2-(butyryloxymethyl)-1,3-oxathiolan-5-one (V), which is submitted to optical resolution to afford the (R)-enantiomer (VI). The reduction of (VI) with Li(t-BuO)3AlH, followed by acetylation with acetic anhydride gives 5-(acetoxy)-2(R)-(butyryloxy)-1,3-oxathiolane (VII), which by treatment with HCl in dichloroethane is converted into 2(R)-(butyryloxy)-5-chloro-1,3-oxathiolane (VIII). Condensation of (VIII) with 5-fluoro-bis(trimethylsilyl)cytosine (IX) ­ obtained by silylation of cytosine (X) with HMDS ­ by means of NaHCO3 in dichloroethane gives a diastereomeric mixture of the butyrate nucleosides (XI), which is hydrolyzed with butylamine in methanol yielding the corresponding diastereomeric mixture of the (2R,5S)-isomer, emtricitabine, and the (2R,5R)-isomer (XII). This mixture is separated by crystallization of the corresponding hydrochlorides obtained by treatment with HCl in methanol/dioxane.

1 Almond, M.; Painter, G.R.; Liotta, D.C.; Cleary, D.; Soria, J. (Emory University; Triangle Pharmaceuticals, Inc.); Method of manufacture of 1,3-oxathiolane nucleosides. WO 0009494 .
中间体序号 中间体编号 品名 CAS号 分子式 供应商 用于合成
(I) 36965 (Z)-2-butene-1,4-diol 6117-80-2 C4H8O2 详情 详情
(II) 36966 (Z)-4-(butyryloxy)-2-butenyl butyrate C12H20O4 详情 详情
(III) 39681 2-hydroxy-2-methoxyethyl butyrate C7H14O4 详情 详情
(IV) 18524 2-sulfanylacetic acid 68-11-1 C2H4O2S 详情 详情
(V) 36968 (5-oxo-1,3-oxathiolan-2-yl)methyl butyrate C8H12O4S 详情 详情
(VI) 39682 [(2R)-5-oxo-1,3-oxathiolan-2-yl]methyl butyrate C8H12O4S 详情 详情
(VII) 39683 [(2R)-5-(acetoxy)-1,3-oxathiolan-2-yl]methyl butyrate C10H16O5S 详情 详情
(VIII) 39685 [(2R)-5-chloro-1,3-oxathiolan-2-yl]methyl butyrate C8H13ClO3S 详情 详情
(IX) 36959 5-fluoro-N-(trimethylsilyl)-2-[(trimethylsilyl)oxy]-4-pyrimidinamine; N-[5-fluoro-2-[(trimethylsilyl)oxy]-4-pyrimidinyl]-N-(trimethylsilyl)amine C10H20FN3OSi2 详情 详情
(X) 16747 4-amino-5-fluoro-2(1H)-pyrimidinone; 5-fluorocytosine 2022-85-7 C4H4FN3O 详情 详情
(XI) 36970 (rac)-[(2R,5S)-5-[4-amino-5-fluoro-2-oxo-1(2H)-pyrimidinyl]-1,3-oxathiolan-2-yl]methyl butyrate C12H16FN3O4S 详情 详情
(XII) 36984 benzyl 6-oxo-5,6,7,8-tetrahydro-2-naphthalenylcarbamate C18H17NO3 详情 详情
Extended Information